PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G010800.1
Common NamePOPTR_0008s01130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 323aa    MW: 36303.2 Da    PI: 8.4374
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G010800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.58.9e-16252298552
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                         +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++L+k+  el
  Potri.008G010800.1 252 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKR-REL 298
                         79****************************************76.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-13248320IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-15248295No hitNo description
PROSITE profilePS5021711.691250295IPR004827Basic-leucine zipper domain
CDDcd147073.87E-23252298No hitNo description
PfamPF001708.3E-13252296IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-11252297No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGMQTMGSQG DGSSHHKQSQ FQPLVRQNSM YSLTLDEVQN QLGDLGKPLS SMNLDELLKN  60
VWTVEANRTM GLEVEGIPFA NQTALQHQAS ISLTSALSKK TVDEVWKDIQ QSKHDGEMKS  120
RERQPTLGEM TLEDFLVKAG VVAEASVDKK DGGSVVAVDT HAAQQFLQQS QWVQYPPHPQ  180
YHHPQQSMMG VYMPGQPMPQ PLHMGAGSMM DVSYPENQVT LPPPLMGTLS DTQTPARKRG  240
VPEDMIGKTV ERRQKRMIKN RESAARSRAR KQAYTNELEN KVSRLEEENE RLRKRRELEN  300
MLPCVPLPEP KYQLRRTASA PF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.65600.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G010800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452790.0EF145279.1 Populus trichocarpa clone WS01122_M06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311917.20.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
RefseqXP_024462231.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES35e-94AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLB9HK820.0B9HK82_POPTR; Uncharacterized protein
STRINGPOPTR_0008s01130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132034105
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.12e-81ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]