PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G051200.1
Common NamePOPTR_0008s05110g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 178aa    MW: 19603.3 Da    PI: 9.6077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G051200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00134769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Potri.008G051200.1 47 FECKTCNRKFPSFQALGGHRASH 69
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.72E-945114No hitNo description
PfamPF139121.6E-124671IPR007087Zinc finger, C2H2
PROSITE profilePS501579.914774IPR007087Zinc finger, C2H2
SMARTSM003550.154769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139126.2E-1091116IPR007087Zinc finger, C2H2
SMARTSM003550.592114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.91292114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKRSLYAREI DSITMANCLV FLSKGRESYS FPSFDHAINN NSPSRVFECK TCNRKFPSFQ  60
ALGGHRASHK KPKLMGGEGS FESQSPAKPK THECSICGLE FAIGQALGGH MRRHRAALND  120
QNQLADPLSP PSSDHKQVVP VVKKSNSRRV LCLDLNLTPN ENDMELFKLG NAAPIYS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.109951e-166stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G051200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7005231e-163JN700523.1 Populus trichocarpa C2H2-type zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311150.11e-130zinc finger protein ZAT11
TrEMBLB9HM541e-129B9HM54_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05110.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-40C2H2 family protein