PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G052000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 209aa    MW: 23804.3 Da    PI: 10.5661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G052000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-06981371155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  Potri.008G052000.1  98 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 137
                         899***************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.42387136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1098148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-498141No hitNo description
Gene3DG3DSA:4.10.280.103.5E-898154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSSTCNNISQ QSMLLSKRVS VPEVQMDFQA MQMKKRTINE LSNLLPQRGP SDLVENKTAL  60
STWKTNKRKK ANSPGELWNH QAMESINIQE QKFQVPVRRS QKLSDKITAL QKLVSPYGKT  120
DTASVLQEAS LYIKLLQEQI QNLIQMLTSS YSRARPVQQS QEIDGRLVDL RSRGLCFVPI  180
SFMQKMTQQQ DHVDPSSYPR KTISARTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G052000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0295232e-83CT029523.1 Poplar cDNA sequences.
GenBankCT0295242e-83CT029524.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311153.31e-150transcription factor bHLH110 isoform X1
TrEMBLA0A3N7FDZ41e-149A0A3N7FDZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05200.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Representative plantOGRP1507223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-21bHLH family protein