PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G070800.1
Common NamePOPTR_0008s07090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 260aa    MW: 28565.4 Da    PI: 9.3444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G070800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-1469115354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+++E+rRRdriN  +  Lr+l+Pk+     +K++Ka+ L  A++++k+L
  Potri.008G070800.1  69 KSHSQAEKRRRDRINAQLGILRKLIPKS-----EKMDKAALLGSAIDHVKDL 115
                         79*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.36466115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-1367124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.91E-1169118No hitNo description
PfamPF000101.4E-1169115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1569118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1272121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.0E-5160223No hitNo description
SuperFamilySSF550213.84E-5160228No hitNo description
CDDcd048731.39E-7162198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEDHFSPCWP AAPAEANWVQ TSAAVYDESF LVPCPSHASA SANFQVNGFP SWSIPIQEAS  60
ENKAASNSKS HSQAEKRRRD RINAQLGILR KLIPKSEKMD KAALLGSAID HVKDLKQKAT  120
EISRTFTIPT EVDEVTVDCD VSQATNPSST NKDKDSTFIR ASVCCDDRPE LFSELIRVLR  180
GLRLTIVRAD IASVGGRVKS ILVLCNKCSK EGGVSISTIK QSLNLVLSRI ASSSVPSNYR  240
IRSKRQRFFL PSHLSQQYT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G070800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311240.10.0transcription factor bHLH51 isoform X1
RefseqXP_024463294.10.0transcription factor bHLH51 isoform X1
RefseqXP_024463295.10.0transcription factor bHLH51 isoform X1
SwissprotQ9XEF03e-46BH051_ARATH; Transcription factor bHLH51
TrEMBLB9HHS90.0B9HHS9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]