PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G070900.1
Common NamePOPTR_0008s07100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 260aa    MW: 28351.9 Da    PI: 8.5068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G070900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181257147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W+++Ed  l+++v+q+G+++W+ I+  ++ gR++k+c++rw + 
  Potri.008G070900.1 12 KGSWSPQEDATLIKLVEQHGPRNWSMISTGIP-GRSGKSCRLRWCNQ 57
                        799*****************************.***********985 PP
2Myb_DNA-binding57.14.2e-1866108347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ 
  Potri.008G070900.1  66 PFTPAEDAKIVQAHAIHGNK-WATIARLLP-GRTDNAIKNHWNST 108
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.899758IPR017930Myb domain
SuperFamilySSF466892.28E-3010105IPR009057Homeodomain-like
SMARTSM007171.3E-151160IPR001005SANT/Myb domain
PfamPF002491.4E-171257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241365IPR009057Homeodomain-like
CDDcd001671.30E-141456No hitNo description
PROSITE profilePS5129426.24959113IPR017930Myb domain
SMARTSM007173.4E-1563111IPR001005SANT/Myb domain
CDDcd001671.45E-1266109No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2366112IPR009057Homeodomain-like
PfamPF002493.7E-1566108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGSVNGGDHR IKGSWSPQED ATLIKLVEQH GPRNWSMIST GIPGRSGKSC RLRWCNQLSP  60
EVQHRPFTPA EDAKIVQAHA IHGNKWATIA RLLPGRTDNA IKNHWNSTLR RKRGSVSSAS  120
SESNSVFKRS TLEVSVVSES ESDSGSKRQC LHASPGHNSV NGDVGVDGPE TSLTLSPPGD  180
GFVSMAVAEK LKEGVAVNGR EKDLGESIMK DAEKIRCTEE MDEDCVRALI QKIIQEEVRI  240
YFDRLKTRNG VTIGSLKDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-38111123104MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-381111257158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-381111257158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-38111123104C-Myb DNA-Binding Domain
1msf_C1e-38111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G070900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311241.10.0transcription factor MYB73
SwissprotO231602e-52MYB73_ARATH; Transcription factor MYB73
TrEMBLB9HHT00.0B9HHT0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-54myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]