PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G076800.1
Common NamePOPTR_0008s07650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 256aa    MW: 28646.2 Da    PI: 7.5721
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G076800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.58e-2776166190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY++YA+++GF +r++ ++ s+r+g+i++rt+vC++eg+r++ +k     +r++ra+tr+gC+a++  +k+++g w++ +l++eH+H+la
  Potri.008G076800.1  76 EFYCSYATRTGFVTRMRDHNCSQRDGSIISRTLVCNREGFRKSADKPrMPWSRKPRAVTRVGCRARVSFRKQSNGAWVIRSLVKEHTHPLA 166
                         6******************************************99984556899***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2576166IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDLEHSPDVP NEDLNNSTDG NPQHGSDGTI GGSSIEATSQ PEQSDKMTPN STGGFELTVV  60
EPYVGQEFES EAAALEFYCS YATRTGFVTR MRDHNCSQRD GSIISRTLVC NREGFRKSAD  120
KPRMPWSRKP RAVTRVGCRA RVSFRKQSNG AWVIRSLVKE HTHPLALPEN QSPKARGNPK  180
IYQVPADDKR VHELMRELMV EKKRNASLTE FIQLLFNHIE EHTQGLSEKI QCIVEKVNKM  240
ESEGKKSGSE IIMSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G076800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2278281e-60CU227828.1 Populus EST from severe drought-stressed leaves.
GenBankCU2286081e-60CU228608.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311261.20.0protein FAR1-RELATED SEQUENCE 12
TrEMBLB9HHY30.0B9HHY3_POPTR; FAR1 family protein
STRINGPOPTR_0008s07650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Representative plantOGRP3376727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-48FAR1 family protein