PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G080300.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 349aa    MW: 38035.8 Da    PI: 8.2993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G080300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.5e-082171126
                        GTS--TTTTT-SS-SS CS
             zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                         t tCk+Gd+CkF H+
  Potri.008G080300.4  2 LTRTCKFGDTCKFDHP 17
                        689************9 PP
2zf-CCCH36.11.1e-114470127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ + C++f++t  CkyG +CkF+H++
  Potri.008G080300.4 44 PGVPDCPYFLKTQRCKYGLNCKFNHPK 70
                        5789*********************96 PP
3zf-CCCH41.32.6e-1392116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tG+Ck+G++CkF+H++
  Potri.008G080300.4  92 EPPCAFYMKTGICKFGATCKFHHPK 116
                         79*********************96 PP
4zf-CCCH39.31e-12170196127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tG CkyG++C+++H++
  Potri.008G080300.4 170 PGEVDCPFYLKTGSCKYGATCRYNHPE 196
                         57899********************96 PP
5zf-CCCH41.91.6e-13252277126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f+++tG+Ck+G++CkF+H+
  Potri.008G080300.4 252 PGQAECDFYMKTGECKFGETCKFHHP 277
                         5789*********************8 PP
6zf-CCCH40.45e-13309330627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tGtCkyG++CkF H+p
  Potri.008G080300.4 309 CPYYMKTGTCKYGATCKFDHPP 330
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.469119IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5117IPR000571Zinc finger, CCCH-type
SMARTSM0035640218IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-64370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7654371IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-54873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-54970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44189117IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-789116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-692117IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-1192116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-594115IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554169197IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10171196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.32E-5173197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5175196IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206251279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6252280IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-11253277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5257277IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666303331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6307330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6309328IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10309330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLTRTCKFGD TCKFDHPVWV PEGGIPDWKE VPPIATSETF PDRPGVPDCP YFLKTQRCKY  60
GLNCKFNHPK EKMSLGVSEN TSISALPERP SEPPCAFYMK TGICKFGATC KFHHPKDIQI  120
SLAGQGNDDG VQTNSVVDNG GITGDVNVIK ALVSVTPALL HNSKGLPMRP GEVDCPFYLK  180
TGSCKYGATC RYNHPERTAI NPPAAAIGHP IIAPSMANLN LGVFSPAASI YQTIDPRLST  240
LGVGPTVYPQ RPGQAECDFY MKTGECKFGE TCKFHHPIDR SAPTAKQTEP QTVKLTLAGL  300
PRREGAVHCP YYMKTGTCKY GATCKFDHPP PGEVMVFPNL KELLMQKQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G080300.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320645e-85CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463159.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-157C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR60.0A0A2K1ZDR6_POPTR; Uncharacterized protein
TrEMBLA0A2K1ZDR70.0A0A2K1ZDR7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-154floral homeotic protein (HUA1)