PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G089000.1
Common NamePOPTR_0008s08850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 284aa    MW: 32597.9 Da    PI: 8.9318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G089000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.8e-55101351128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nrat sgyWkatg+dk+
  Potri.008G089000.1  10 LPPGFRFHPTDEELIVYYLRNQATSRPCPA-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFTPRDRKYPNGVRPNRATVSGYWKATGTDKA 99 
                         79****************************.89***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s +++ vg+kk Lvfykgr pkg ktdW+mheyrl
  Potri.008G089000.1 100 IHS-GSKYVGVKKALVFYKGRPPKGAKTDWIMHEYRL 135
                         ***.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-667162IPR003441NAC domain
PROSITE profilePS5100561.51110162IPR003441NAC domain
PfamPF023651.8E-2711135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQGKTIYNQL PPGFRFHPTD EELIVYYLRN QATSRPCPAS IIPEVDIYKF DPWQLPEKAE  60
FGENEWYFFT PRDRKYPNGV RPNRATVSGY WKATGTDKAI HSGSKYVGVK KALVFYKGRP  120
PKGAKTDWIM HEYRLNDPRK QANKQNGSMR LDDWVLCRIY KKRHTIGHLE EKTENTVDAH  180
LDVTPANDVS EQQMMKFPRT CSLSHLLELE YLGSISQLLS GDTYNSNLDL QNLMSNAGTD  240
HVEKIQLGQM SLQHTDRGKF QGNLQGSTLN QPLFMNPTMY GFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-711016517168NO APICAL MERISTEM PROTEIN
1ut4_B1e-711016517168NO APICAL MERISTEM PROTEIN
1ut7_A1e-711016517168NO APICAL MERISTEM PROTEIN
1ut7_B1e-711016517168NO APICAL MERISTEM PROTEIN
3swm_A1e-711016520171NAC domain-containing protein 19
3swm_B1e-711016520171NAC domain-containing protein 19
3swm_C1e-711016520171NAC domain-containing protein 19
3swm_D1e-711016520171NAC domain-containing protein 19
3swp_A1e-711016520171NAC domain-containing protein 19
3swp_B1e-711016520171NAC domain-containing protein 19
3swp_C1e-711016520171NAC domain-containing protein 19
3swp_D1e-711016520171NAC domain-containing protein 19
4dul_A1e-711016517168NAC domain-containing protein 19
4dul_B1e-711016517168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88130.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G089000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312256.20.0NAC transcription factor 29
SwissprotK4BNG71e-122NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLB9HI900.0B9HI90_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-116NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]