PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G098600.2
Common NamePOPTR_0008s09810g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 909aa    MW: 101158 Da    PI: 7.8294
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G098600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-402299178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                        +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Potri.008G098600.2 22 VCQVEDCRADLSNAKDYHRRHKVCNAHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 99
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-321784IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.9582097IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3721102IPR004333Transcription factor, SBP-box
PfamPF031104.9E-292396IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.37E-8673820IPR020683Ankyrin repeat-containing domain
SMARTSM00248560675704IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.1E-8679807IPR020683Ankyrin repeat-containing domain
CDDcd002042.70E-8680792No hitNo description
SMARTSM0024842732762IPR002110Ankyrin repeat
SMARTSM00248330772801IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MDEDAKSGKK TKVTMTASNR AVCQVEDCRA DLSNAKDYHR RHKVCNAHSK ASKALVGNVM  60
QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH NKRRRKTHPE NLVNEGSLND EKGSSYLLIS  120
LLRILSNLHS NGSDQTKDQD LLSHILRSLA DLAGATNGRS LSESLQGSQG LANARAIVGN  180
LDKAHDALTN GPESARPSSS ASKKDDCIIS QDLLRPLGQC GTVPISDLVQ KRILDNDAQV  240
GTLQAPSGSQ SITLFPSRNN LPAKTNEPEA TVGRIKLNNF DLNNAYDDSQ HSVENLERSH  300
APVDTGMGSF SCPLWVWSDS QKTSPPHTSG KSDSTFSQSP SSSSGEAQIR TDRIVFKLFG  360
KDPNDFPVAL RTQILDWLSH SPTDIESYIR PGCIVLTIYL CLEKSKWEEV CLDLGASLSR  420
LLNTSSDSFW QTGWVYVRVQ NCVSFIYNGR VVLDTPLPIK SHKNCRISSI TPIAVSLSER  480
TQFVVRGFDI AQPMTRLLCA VEGKYLVQET CYDLMDGADT MNELDKPQYL NFQCSVPNFV  540
GRGFIEVEDH GLSSSFFPFI VAEPEVCSEI RMLEDAIQVA ETATDMHTIA ERMDIKNQAL  600
DFIHEMGWLL HRSRLKFRLG QLDPNLDLFP FKRFKWLIQF SMDHDWCAVV RKLLAVVFDG  660
TVDAGEHSSI ELALLDMGLL HRAVRRNCRP MVELLLRYIP DKKFGGTGTQ QNQLVDGRNS  720
RFMFKPDVVG PAGLTPLHVA ACRDGAENVL DALTDDPGLV GIDAWKRARD STGLTPYDYA  780
CLRGHYSYIH LIQRKINKKS ESGNVVLDIP SSLVDCNSKQ KDGNELPKVT SLHTEKIKMK  840
ATHQHCKLCE QKLVCGAART SLVYRPAMLS MVAIAAVCVC VALLFKSSPE VLYVFQPFRW  900
ELLKYGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2922961084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197KRRRKTH
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G098600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311356.20.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLB9HIH20.0B9HIH2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09810.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]