PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G106700.1
Common NamePOPTR_0008s10620g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 144aa    MW: 16358.6 Da    PI: 10.1246
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G106700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.11.8e-082552532
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLe 32
                        kr +r+++NRe+ArrsR ++++ +  L 
  Potri.008G106700.1 25 KRRKRMISNRESARRSRMKRQKHLGGLV 52
                        9********************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-720105No hitNo description
SMARTSM003384.5E-52192IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.77E-82576No hitNo description
PfamPF001701.6E-62559IPR004827Basic-leucine zipper domain
CDDcd147024.44E-112676No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSSLAKAGS SGSDVDAPNA TIDEKRRKRM ISNRESARRS RMKRQKHLGG LVSEKSILER  60
KIYEDNEKYV AIWQSHFALE SQNKILRDEK MKLAENLKNL QQILSGYEVP ESDQDIEVSD  120
RFLNPWQVSS PVKPITASGM FKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843RSRMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G106700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312336.21e-101bZIP transcription factor 53
TrEMBLB9HIQ01e-100B9HIQ0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s10620.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15536812
Representative plantOGRP1379334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.17e-25basic region/leucine zipper motif 53