PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G112000.10

Common Name

POPTR_0008s11120g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 127aa MW: 14695.2 Da PI: 8.8773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G112000.10	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.1	5.8e-17	51	100	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Potri.008G112000.10 51 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQHLQ 100 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-23	47	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-19	47	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.082	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.73E-14	51	104	No hit	No description
Pfam	PF00010	2.6E-14	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-12	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MRGKGNQNQV EEEYEEDEFG SRKDGPSSSF TVNNNNSSKD GKNSDRANAI RSKHSVTEQR 60 RRSKINERFQ ILRDLIPHSD QKRDTASFLL EVIEYVQHLQ EKVQKYEGPY QGWSPEPAKL 120 MPWVKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9776	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G112000.10

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002312362.2	2e-86	transcription factor BIM2 isoform X1
Refseq	XP_024462940.1	2e-86	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	8e-54	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9HIU8	4e-85	B9HIU8_POPTR; Uncharacterized protein
TrEMBL	U5G5G6	1e-85	U5G5G6_POPTR; Uncharacterized protein
STRING	POPTR_0008s11120.1	7e-86	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-44	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Potri.008G112000.10
Entrez Gene	7483907

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]