PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G112000.3

Common Name

POPTR_0008s11120g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 257aa MW: 28629 Da PI: 6.3087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G112000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.2	2.2e-16	49	98	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Potri.008G112000.3 49 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQHLQ 98 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-22	45	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-19	45	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.082	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-15	49	102	No hit	No description
Pfam	PF00010	1.0E-13	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-12	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRGKGNQNQV EEEYEEDEFG SRKDGPSSSF TVNNNNSNGK NSDRANAIRS KHSVTEQRRR 60 SKINERFQIL RDLIPHSDQK RDTASFLLEV IEYVQHLQEK VQKYEGPYQG WSPEPAKLMP 120 WRNSHWRLQS SVGHPQAIKN GYVPGETFPG KLDENNIALT PAMLPSTPNL VESDHVACKV 180 LEHQPELGNK AMPLPTPAPI RSVGLVAHPC QLPVSDAQSA ECPITSEMLN QQELAIEAGT 240 INISSVYSQE CVRSCC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9776	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G112000.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462941.1	0.0	transcription factor BIM2 isoform X2
Swissprot	Q9CAA4	5e-87	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2K1ZFH0	0.0	A0A2K1ZFH0_POPTR; Uncharacterized protein
STRING	POPTR_0008s11120.1	1e-178	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-77	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Potri.008G112000.3
Entrez Gene	7483907

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]