PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G120600.1
Common NamePOPTR_0008s11950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 251aa    MW: 27534.3 Da    PI: 8.5745
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G120600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ 
  Potri.008G120600.1   4 SCNGCRVLRKGCSDNCTIRPCLqwiktPDSQANATLFLAKFYGRAGLVNLIEAGPPKLRPAIFRSLLYEACGRIVNPVYGSVGMLWSGNWA 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                          +q++++++l ++
  Potri.008G120600.1  95 QCQAAVDAVLKGS 107
                         *****99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8043109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCT IRPCLQWIKT PDSQANATLF LAKFYGRAGL VNLIEAGPPK  60
LRPAIFRSLL YEACGRIVNP VYGSVGMLWS GNWAQCQAAV DAVLKGSPIM SLPSSSEVPA  120
PHLISSLNTY DIRHVPRDQD SPELTKAKNQ TRFKRSIATR PNSQSEPTSR VNPGEWGFEP  180
VRDSCLGHLG NRGSYIKDED SIFSVETVEG SLWSQVEPDS FFKFNGQGDG SDVRLDLTLG  240
LGIVSRSHRM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G120600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312397.21e-180LOB domain-containing protein 42
SwissprotQ9CA304e-74LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A2K1ZFW61e-179A0A2K1ZFW6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11950.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-76LOB domain-containing protein 42