PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G136800.2
Common NamePOPTR_0008s13620g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 394aa    MW: 44808 Da    PI: 4.5443
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G136800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35121042103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk ye++ de+++++isws++++sfv++d++ef  ++LpkyFkhsn +SFvRQLn+YgF+k+++++         weF+++ F +g+k+
  Potri.008G136800.2  12 FLKKCYEMVGDESTNSIISWSQTNDSFVIWDMTEFCVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDH---------WEFANDGFIRGQKH 93 
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+k++
  Potri.008G136800.2  94 LLKNISRRKNS 104
                         ********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-538101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-338101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVKSSDSGVA PFLKKCYEMV GDESTNSIIS WSQTNDSFVI WDMTEFCVHL LPKYFKHSNS  60
SSFVRQLNIY GFRKIDTDHW EFANDGFIRG QKHLLKNISR RKNSQGTDNR KLVQQQDNSV  120
EHHESVENAG LWKEVENLKT GKIALTQELV KLSQHQETAD NKLLLLRDRL QGMEKNQQQM  180
LSFLVMAMQK SPGFLAQLLH KKENNWRMAE PGSIVEQVAD DADPLASEGM IVKYQPPVDE  240
TFEPMHAPPI GPENPRESNP SSDGMKDFFF SSEFTELLMD ENLGFENHAP FVLPELADDG  300
AWEQLLLANP FVANIKDSET DYEEPTDAET DTGTAVPGTQ LDRSQDFENL IEQMEKYHNL  360
ENQATDEGPH FEKPRNLEIL TKQMGLLASE TNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-23410412123Heat shock factor protein 1
5d5u_B4e-23410121129Heat shock factor protein 1
5d5v_B4e-23410121129Heat shock factor protein 1
5d5v_D4e-23410121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G136800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140020.0KP014002.1 UNVERIFIED: Populus simonii heat shock transcription factor A8b-like (HsfA8b) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311537.10.0heat stress transcription factor A-8 isoform X1
RefseqXP_024463668.10.0heat stress transcription factor A-8 isoform X1
RefseqXP_024463669.10.0heat stress transcription factor A-8 isoform X1
SwissprotQ9S7U51e-107HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLB9HJI40.0B9HJI4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s13620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Representative plantOGRP1084768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-109heat shock transcription factor A8