PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G140200.1

Common Name

POPTR_0008s13960g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 280aa MW: 31457.9 Da PI: 9.9638

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G140200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	321	3.6e-98	1	279	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverd 78 mddd+ + n+gyyep+ ke +glq m s+ +rd+k r+ +++ ++a+ ++d m++ +rd++++ Potri.008G140200.1 1 MDDDALNMHNWGYYEPS--YKEPFGLQWMPSMVDRDTKHflprRDPINIMIGANGAYLPHDcvvsdapehMNY-MRDSWINR--------- 79 9*9988***99..9999***********999987766669***************9.9***9......... PP GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168 +k+l++l+ + + + v ++t+ ++s+q+ l+++ ++ + +e++ ++++ ++ +++++ + ++k+pk+kk +k+k Potri.008G140200.1 80 EKFLNILPPNPN--------YVVPQQTSGAHSMQM-----LQPPNSSrDERLSRIEEPSVSNE-GNQLKRRQVG-GTSPKTPKAKKPRKPK 155 899999995544........566788999999999.....55554442445556666666654.4444444444.5666666666666666 PP GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259 + +++++ +r+k kks+d+v+ng+++D+s++P+P CsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkrrgaRiagrK Potri.008G140200.1 156 D--------GNNNTV-QRAKPAKKSVDVVINGIDMDISGIPIPTCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKRRGARIAGRK 237 6........222222.57899****************************************************************** PP GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 mSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir Potri.008G140200.1 238 MSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279 ***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.2E-106	1	279	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	7.0E-180	1	279	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDDDALNMHN WGYYEPSYKE PFGLQWMPSM VDRDTKHFLP RRDPINIMIG ANGAYLPHDC 60 VVSDAPEHMN YMRDSWINRE KFLNILPPNP NYVVPQQTSG AHSMQMLQPP NSSRDERLSR 120 IEEPSVSNEG NQLKRRQVGG TSPKTPKAKK PRKPKDGNNN TVQRAKPAKK SVDVVINGID 180 MDISGIPIPT CSCTGTPQQC YRWGCGGWQS ACCTTNVSVY PLPMSTKRRG ARIAGRKMSQ 240 GAFKKVLEKL AAEGYNFANP IDLRTHWARH GTNKFVTIR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.16344	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269\|PubMed:15722463}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G140200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144625	0.0	EF144625.1 Populus trichocarpa clone WS01116_B19 unknown mRNA.
GenBank	EU130560	0.0	EU130560.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002312486.1	0.0	protein BASIC PENTACYSTEINE2
Swissprot	Q9SKD0	1e-107	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A8D197	0.0	A8D197_POPTR; BBR-BPC family protein
STRING	POPTR_0008s13960.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01930.2	1e-102	basic pentacysteine1

Link Out ? help Back to Top
Phytozome	Potri.008G140200.1
Entrez Gene	7471447

Publications ? help Back to Top
Santi L, et al. The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J., 2003. 34(6): p. 813-26 [PMID:12795701] Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]