PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G142000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 258aa    MW: 29485.4 Da    PI: 8.0092
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G142000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-331972255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Potri.008G142000.2 19 PRLRWTPELHRCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.831575IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-331576IPR009057Homeodomain-like
SuperFamilySSF466891.22E-161774IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-241972IPR006447Myb domain, plants
PfamPF002498.9E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGSCGRSGAV RQYVRSKVPR LRWTPELHRC FVHAIERLGG QDKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRSDLRGQ DNSSTQQKRR SFDDHDECVE DVKPIEESDS HLMYRPFSSK  120
RARIETRSSI SEENLQCSQG IWETVSNPYS FDDYMGIMEE GNGGGFKWEQ AHSKPQSTAF  180
SPSLDLYYLN TSKREAEESD LVKVENLNQT LSLFLLPAFL MGLSVTLVFG FIFSSLLTSV  240
GWPLFRFHIH AYINRYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.121901e-176bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G142000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462554.11e-152putative Myb family transcription factor At1g14600 isoform X1
TrEMBLA0A2K1ZH301e-151A0A2K1ZH30_POPTR; Uncharacterized protein
STRINGcassava4.1_029048m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.13e-37G2-like family protein