PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G156100.2
Common NamePOPTR_0008s15590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 750aa    MW: 82357 Da    PI: 6.681
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G156100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR34.83.2e-114674931440
                 TCR  14 lkkYCeCfaagkkCseeCkCedCkNke 40 
                         l++YCeCfaag++C e C C+dC+Nk 
  Potri.008G156100.2 467 LQLYCECFAAGVYCIEPCACQDCFNKP 493
                         799**********************96 PP
2TCR50.15.6e-16540578139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Potri.008G156100.2 540 RHKRGCNCKKSSCLKKYCECYQGGVGCSLNCRCEGCKNA 578
                         589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163432.776452580IPR005172CRC domain
SMARTSM011141.1E-8454495IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.8E-8467492IPR005172CRC domain
SMARTSM011144.4E-17540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDTPEKTQVT SPLSKFEDSP VFNYINSLSP IKPVKSINIA HTFHSLSFAS LPSVFTSPHV  60
NSHKETRFLK RHNYADLSKP EFSSENGNEA CNDEGVAVDA AQLYDNSSEL QESFDPGVSI  120
REASVEPPSE HSKLAIELPR TLKYDCGIPD SDQTPRCGTQ TDTVSKSDGT IASLVPFTNV  180
ASHKDSPEGQ VHLAGLYKIE SKKEATECDW ENFISDSADL LIFNSPIDAE GFKELFQKSP  240
NPVVGFCTSF SEVQKMQIVN PIGPGEQNEK EDPFTQPGET IELTQMDPTQ DNLAANKDPN  300
KYIISNPSKA VSNLHRGMRR RCLDFEMVGA RRKNVEDGSS TSSVVVQSDE KITYKNTQLV  360
PFKPSSDSSR CILPGIGLHL NALAINSRDS KKIKHETFSS SITLPGSAAS FHSPTSGQEL  420
DESLALASTE RDRDPNDNVV PFVEDFSQTS PKKKRHVGRR SRGLQALQLY CECFAAGVYC  480
IEPCACQDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR SSEPAPEIGD ESSKTPASAR  540
HKRGCNCKKS SCLKKYCECY QGGVGCSLNC RCEGCKNAFG RKDGSALVEM EDEPEDETEA  600
SEKNGVDKTV QKAEIQNNDE QHPNSALPTT PLRFSRPLVQ LPFSSKGKPP RCFLGVGSSS  660
GLYTGQRYGK PNILRPQWKF EKQFQNVSGD EIPEMLRENH SPSSGIKTSP NSKRVSPPQS  720
NLGSSPGRRS GRKLILQSIP SFPSLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1346657721120Protein lin-54 homolog
5fd3_B6e-1346657721120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G156100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175860.0AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462660.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2K1ZHX50.0A0A2K1ZHX5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s15590.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-161TESMIN/TSO1-like CXC 2