PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G161800.1
Common NamePOPTR_0008s16170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 302aa    MW: 34501.5 Da    PI: 9.1004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G161800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-06159207255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +  h++ Er RR+r ++++  L +llP++     +K +K +i  +A + I++L+
  Potri.008G161800.1 159 CYRHKMSERLRRQRERNGYLALHSLLPHD-----TKKDKNSIMLMAAKKIQELE 207
                         5679************************9.....8999999*******999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-10154223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.45E-8155207No hitNo description
PROSITE profilePS5088811.674157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7161228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQKHQHGAPV STKISFLDCI DLSTPDIQQS FSLTNRYFAW FEAGYVEVSS TTTFKETVIY  60
SSWKLKFELP GKGQGRGLEM DHFFQQQFLQ GDVFCYANGP VNQSAFVPYI CRPWGGSEVG  120
VGSSSIGVYP TNMNRRMIEF MRRSFTVKIE TQEPDSKRCY RHKMSERLRR QRERNGYLAL  180
HSLLPHDTKK DKNSIMLMAA KKIQELEMYK EMLKRRNDEI EERLAASGIR NVESTKIRIE  240
VANPTSGVDP MIDVLKCLKS LGTKTRSIQS QFSDQELVAV MEIETKIEAA EIENAVKRTL  300
A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156169KRCYRHKMSERLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G161800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462136.11e-166transcription factor bHLH92
RefseqXP_024462137.11e-166transcription factor bHLH92
RefseqXP_024462138.11e-166transcription factor bHLH92
RefseqXP_024462139.11e-166transcription factor bHLH92
RefseqXP_024462140.11e-166transcription factor bHLH92
TrEMBLA0A2K1ZI810.0A0A2K1ZI81_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-35bHLH family protein