PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G161800.3
Common NamePOPTR_0008s16170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 223aa    MW: 25554.4 Da    PI: 9.3918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G161800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.2e-0780128255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +  h++ Er RR+r ++++  L +llP++     +K +K +i  +A + I++L+
  Potri.008G161800.3  80 CYRHKMSERLRRQRERNGYLALHSLLPHD-----TKKDKNSIMLMAAKKIQELE 128
                         567*************************9.....8999999*******999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1075144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-776128No hitNo description
PROSITE profilePS5088811.67478127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-781149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002484133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDHFFQQQFL QGDVFCYANG PVNQSAFVPY ICRPWGGSEV GVGSSSIGVY PTNMNRRMIE  60
FMRRSFTVKI ETQEPDSKRC YRHKMSERLR RQRERNGYLA LHSLLPHDTK KDKNSIMLMA  120
AKKIQELEMY KEMLKRRNDE IEERLAASGI RNVESTKIRI EVANPTSGVD PMIDVLKCLK  180
SLGTKTRSIQ SQFSDQELVA VMEIETKIEA AEIENAVKRT LA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17790KRCYRHKMSERLRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G161800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462136.11e-167transcription factor bHLH92
RefseqXP_024462137.11e-167transcription factor bHLH92
RefseqXP_024462138.11e-167transcription factor bHLH92
RefseqXP_024462139.11e-167transcription factor bHLH92
RefseqXP_024462140.11e-167transcription factor bHLH92
TrEMBLA0A2I4KKB61e-166A0A2I4KKB6_POPTR; BHLH family protein
STRINGPOPTR_0008s16170.11e-165(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.16e-36bHLH family protein