PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G163900.1
Common NamePOPTR_0008s16390g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 216aa    MW: 23996.9 Da    PI: 9.4021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G163900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-055779123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Potri.008G163900.1 57 YTCTFCKREFKSAQALGGHMNVH 79
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-65483No hitNo description
Gene3DG3DSA:3.30.160.607.1E-45582IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1155784IPR007087Zinc finger, C2H2
SMARTSM003550.00355779IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-65780IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MERNSLSSNV NGHSNIGSRA CNNNDKKKKL RDSWNFSSCQ SNGHDYLGGL SWPPRSYTCT  60
FCKREFKSAQ ALGGHMNVHR RDRARLRLSP PRDDQCPILT LNLNPNPSFC TPFNRTIPSL  120
VSPPLTAPST PSLASEVKKW TIGGGNPLDP SSPNLSDLTT NRSRKSFFEN FDGFTRQDGF  180
KIWNKGEIVR LDLDIGLVSD SKDDLDLELR LGSLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135279229superman protein
2l1o_A2e-135279229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G163900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9873010.0JX987301.1 Populus tomentosa isolate PtoSUP2 superman gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311666.31e-156transcriptional regulator SUPERMAN
TrEMBLB9HKF81e-155B9HKF8_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16390.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-34C2H2 family protein