PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G168200.1

Common Name

POPTR_0008s16800g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 200aa MW: 22094.9 Da PI: 10.8352

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G168200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	27	47	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+ +F++ L Hi +H Potri.008G168200.1 27 CRICDHVFTSVQALIDHIESH 47 ******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.642	25	52	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAGFGWSLRH GNTLGSKRPL LPSQIACRIC DHVFTSVQAL IDHIESHMVE DVETARWKNG 60 LSFSSSRADP LANPFSFGPS TPSRSPQTGF LGHSRYNFLS STERNPAFSP STPQNIASAQ 120 PIIRAPQSQR SSLARNKYTV GRSQHVPFAL PTQPKLVMEE PHSIDRTRPF LRQLERPFSS 180 GGNHGKRSYA ETLDLTLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G168200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030483.1	5e-67	PREDICTED: uncharacterized protein LOC105129916
TrEMBL	B9HKH6	1e-144	B9HKH6_POPTR; Uncharacterized protein
STRING	POPTR_0008s16800.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14890	8	12

Link Out ? help Back to Top
Phytozome	Potri.008G168200.1
Entrez Gene	7467544