PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G180800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 249aa    MW: 28302.9 Da    PI: 6.7064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G180800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.6e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W+ eEd++l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Potri.008G180800.1 14 RGTWSVEEDQKLMNFILSNGIKCWRHVPKLAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding53.36.4e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++++ E++ lv+++ +lG++ W++Ia+ ++ gRt++++k++w++
  Potri.008G180800.1  67 RGAFSEAEEDHLVELHSRLGNR-WSKIAAFFP-GRTDNEIKNHWNT 110
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.926961IPR017930Myb domain
SuperFamilySSF466893.38E-2811108IPR009057Homeodomain-like
SMARTSM007173.7E-101363IPR001005SANT/Myb domain
PfamPF002492.4E-121461IPR001005SANT/Myb domain
CDDcd001672.11E-71661No hitNo description
PROSITE profilePS5129425.52762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565116IPR009057Homeodomain-like
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002492.3E-1567110IPR001005SANT/Myb domain
CDDcd001676.77E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRRPCCDKV GLKRGTWSVE EDQKLMNFIL SNGIKCWRHV PKLAGLLRCG KSCRLRWMNY  60
LRPDLKRGAF SEAEEDHLVE LHSRLGNRWS KIAAFFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDPQGHEPPI EQAETNCDAK ESTFAAMKEV VGNINVDQKL LENPVSKVET RLDHDHSCSG  180
HNTSKALRED SDAGWSTFPS LTDLQSDSCL SRSMDEYVVQ ESSSESYWID TYVDSLLSWD  240
GLSFSNLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G180800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311737.30.0myb-related protein 315
SwissprotP813941e-68MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2K1ZJ860.0A0A2K1ZJ86_POPTR; Uncharacterized protein
TrEMBLA0A3N7FF860.0A0A3N7FF86_POPTR; Uncharacterized protein
STRINGPOPTR_0008s18110.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2812333
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-76myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]