PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G181000.7
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 596aa    MW: 66832.5 Da    PI: 5.5952
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G181000.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.75e-08201225125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+ +LH++Fv+av+q+G   
  Potri.008G181000.7 201 KARVVWSVDLHQKFVKAVNQIGFDT 225
                         68*******************7554 PP
2G2-like38.33.1e-122452722855
             G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                          Pk+il++m+v+ Lt+e+v+SHLQkYRl
  Potri.008G181000.7 245 GPKKILDMMNVPWLTRENVASHLQKYRL 272
                         5**************************8 PP
3Response_reg80.36.6e-27211291109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++  ge + + + 
  Potri.008G181000.7  21 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKG 109
                         89*********************.***************999999**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el++
  Potri.008G181000.7 110 VQHGACDYLLKPIRMKELRN 129
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1401535IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3518150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-4418150No hitNo description
SMARTSM004482.5E-3219131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.53320135IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.9E-2421130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.47E-3022135No hitNo description
Gene3DG3DSA:1.10.10.605.9E-25199277IPR009057Homeodomain-like
SuperFamilySSF466893.58E-13199276IPR009057Homeodomain-like
PfamPF002494.3E-6203271IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.2E-10244272IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MMENNGFSSP RNDSFPAGLR VLVVDDDPTW LKILEKMLKK CSYEVTTCGL ARDALNLLRE  60
RKGGYDIVIS DVYMPDMDGF KLLEQVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELRNI WQHVFRKKIH EVRDIETLER VESFQMTRNG SDQYEDGHVL CGEDLTSIKK  180
RKHIESKHDE KDTGDSISTK KARVVWSVDL HQKFVKAVNQ IGFDTTSLPS FDGAMTGSVC  240
LAEVGPKKIL DMMNVPWLTR ENVASHLQKY RLYLSRLQKE NDFKNPAGGI KQSDSPLRDS  300
AGSFGSQNSI NLQHNDVSNG SYRFSGSSLV VHNGDPRSHD SDRKRLVSTP VEEPKRTLTV  360
NVPNPCIPRS SQMEFGHPLA PPQSEVDFGA LDSTFPTKYP WCGIPEIQLK KEHNPLHLND  420
EFSHLPLPGQ KQLTQADYPQ PAPAISSAPS LTPSHNEYRS NVNHASSTAI AVDSSPIQTK  480
TNVANHQAIE LISKSTPSLE NQGFNMNSIT EFESSRKNIN LGMLPFTTLE EDLQVCWVPG  540
DCYMNLGLQN IEVLEYFDPG LITDVPVNLN DGLRFDYEFN DPTEYSLIDQ SLFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3olv_A2e-14191376126Chemotaxis protein CheY
3olv_B2e-14191376126Chemotaxis protein CheY
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G181000.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081450.0FN908145.1 Populus x canadensis mRNA for putative B-type response regulator 14 (rr14 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463381.10.0two-component response regulator ARR11 isoform X1
TrEMBLA0A2K1ZJ940.0A0A2K1ZJ94_POPTR; Two-component response regulator
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-128response regulator 11