PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G189000.1

Common Name

POPTR_0008s19330g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 220aa MW: 25062.3 Da PI: 6.7658

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G189000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	205.2	2.5e-63	6	167	2	168
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++f+ ++q+CyvqC+fC+til+vsvP +sl++vvtv CGhCtsl+svn++k+s l s + s+++e++e+l+ e ++ k +++ +s Potri.008G189000.1 6 HLFDLPDQICYVQCGFCTTILLVSVPCSSLSTVVTVICGHCTSLFSVNMKKFSFLPFNRS-TSLSYEDEQKEQLRPEFNAQKGLEMQ-NSF 94 7899*******************************************99987655555.58899999999999987776666554.445 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++ s++ ++++ ++v r +++PPekrqr Psaynrfikeei+rik++nP i+h+eafs+aaknWah P + + Potri.008G189000.1 95 MAISSNND-EDDRINQVNR--VINKPPEKRQRGPSAYNRFIKEEIRRIKTENPRIAHKEAFSTAAKNWAHSPLVQY 167 55444433.4444444444..379*********************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-62	11	167	IPR006780	YABBY protein
SuperFamily	SSF47095	1.06E-7	111	161	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	116	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSTLNHLFDL PDQICYVQCG FCTTILLVSV PCSSLSTVVT VICGHCTSLF SVNMKKFSFL 60 PFNRSTSLSY EDEQKEQLRP EFNAQKGLEM QNSFMAISSN NDEDDRINQV NRVINKPPEK 120 RQRGPSAYNR FIKEEIRRIK TENPRIAHKE AFSTAAKNWA HSPLVQYCKD IDGESSGLEE 180 ENGSWSCDAA DQFQVNVESK GLHERKVPRH FMWAKTPFE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G189000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462575.1	1e-143	axial regulator YABBY 4
Swissprot	Q9LDT3	5e-70	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2K1ZJQ3	1e-164	A0A2K1ZJQ3_POPTR; Uncharacterized protein
STRING	POPTR_0008s19330.1	1e-155	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52
Representative plant	OGRP9612	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	4e-70	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.008G189000.1
Entrez Gene	7469059

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]