PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G193400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 251aa    MW: 27936.8 Da    PI: 8.1299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G193400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001287109123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C k F ++  L  H++ H
  Potri.008G193400.1  87 FGCQYCFKEFANSQALGGHQNAH 109
                         56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-583113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.27E-683114No hitNo description
PROSITE profilePS5015710.90787114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEKEASNTLS SILDGDQNGY SAESCTVERK LRLFGFELNP YKHNESSMKG STEGDHESVN  60
SSNTASSERA KPVKEKSSSA GPGDKKFGCQ YCFKEFANSQ ALGGHQNAHK KERMKKRLLQ  120
FQARKASLGG YLQPYQDNLS YNYQYGSTCT PWFFDPSCST TPELTLHEES QISFNPYQDS  180
HLNDSQISKW DAVPADQVPF QQHTRNNFTF SHADQRSRDK PSPLLASKKA CRKSLDLQLG  240
LSTGNSPLPS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G193400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462618.10.0zinc finger protein 5
TrEMBLA0A2K1ZJZ80.0A0A2K1ZJZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04580.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Representative plantOGRP1020968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-15zinc finger protein 5