PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G210300.1
Common NamePOPTR_0008s22520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 151aa    MW: 16532.4 Da    PI: 5.3717
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G210300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.42.1e-5319113397
               NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                         eqdr+lPianv+rimk++lPanakisk+aket+qec+sefisfvt+eas+kc++e+rkt+ngdd++wa++ lGf+dy+ pl+ yl++yre+
  Potri.008G210300.1  19 EQDRLLPIANVGRIMKQILPANAKISKEAKETMQECASEFISFVTGEASEKCRKERRKTVNGDDVCWAMGALGFDDYAGPLRRYLQRYREI 109
                         8****************************************************************************************** PP

               NF-YB  94 egek 97 
                         eg++
  Potri.008G210300.1 110 EGDR 113
                         **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-5118134IPR009072Histone-fold
SuperFamilySSF471131.5E-3920130IPR009072Histone-fold
PfamPF008085.4E-272387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-165169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-167088No hitNo description
PRINTSPR006151.4E-1689107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVDNVGAGAS SDDGGVKLEQ DRLLPIANVG RIMKQILPAN AKISKEAKET MQECASEFIS  60
FVTGEASEKC RKERRKTVNG DDVCWAMGAL GFDDYAGPLR RYLQRYREIE GDRANQEKPA  120
NANNTSIADQ EKEAPPSSSS SYRNNQGIRM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-4319108897NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G210300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462603.11e-108nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLB9N5181e-107B9N518_POPTR; Uncharacterized protein
STRINGPOPTR_0008s22520.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]