PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G210900.2
Common NamePOPTR_0008s23260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 253aa    MW: 28900.3 Da    PI: 8.1824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G210900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-2193143155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+G+r++  +g+W+AeIrdp     + +r++lg++ taeeAaka+++a+k+++g
  Potri.008G210900.2  93 SVYRGIRQRT-WGKWAAEIRDPH----KgARVWLGTYNTAEEAAKAYDEAAKRIRG 143
                         78*****999.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-1493143IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2293152IPR016177DNA-binding domain
CDDcd000181.13E-3093151No hitNo description
Gene3DG3DSA:3.30.730.104.1E-3294152IPR001471AP2/ERF domain
SMARTSM003806.1E-3694157IPR001471AP2/ERF domain
PROSITE profilePS5103223.39394151IPR001471AP2/ERF domain
PRINTSPR003675.9E-1195106IPR001471AP2/ERF domain
PRINTSPR003675.9E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCGGAIISDF VTVKRGRRLT VEDLWSELDP FSEFLRFDYH SNDNNGSKKD PSNLLFPQKP  60
SYTIQVQQEK VEKPSHATEK ENGNKKAQRT RKSVYRGIRQ RTWGKWAAEI RDPHKGARVW  120
LGTYNTAEEA AKAYDEAAKR IRGDKAKLNF PSQTPPTPEA PPPAKKRCIV APETAYVASP  180
FTPPLQEPYS GYQNEDYELE EQILKLESFL GLEPDQMAAR LRENGGDNRD SGDLWMLDDL  240
VTHHQYRRQI NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2195154363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2195151663ATERF1
3gcc_A2e-2195151663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.121250.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G210900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380240.11e-178ethylene-responsive transcription factor RAP2-3
TrEMBLU5G9D11e-177U5G9D1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s23260.11e-178(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-46ethylene-responsive element binding protein