PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G215700.2
Common NamePOPTR_0008s22730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 376aa    MW: 39129 Da    PI: 9.5329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G215700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.6e-091181027
                        GGTS--TTTTT-SS-SSS CS
             zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                        +rtGtCk+G++Ck++H++
  Potri.008G215700.2  1 MRTGTCKFGASCKYHHPK 18
                        8***************96 PP
2zf-CCCH361.2e-113864127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        +++++C ++ +tG+Ck+G++CkF+H++
  Potri.008G215700.2 38 PGERECTYYIKTGQCKFGATCKFHHPQ 64
                        5789*********************97 PP
3zf-CCCH28.82.2e-09200226127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++ +tG Ck+ ++C+++H+p
  Potri.008G215700.2 200 PGQPECQYYIKTGDCKFRSSCRYHHPP 226
                         5789*********************97 PP
4zf-CCCH29.51.3e-09249272427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C+++ + G+Ck+G+ CkF H++
  Potri.008G215700.2 249 PTCSHYTQRGQCKFGPACKFDHPM 272
                         78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035622118IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.62119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9343765IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-43764IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-83964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-44363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483199227IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031199226IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4201226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5203226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324245273IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6245272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5249275IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7249272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4251270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRTGTCKFGA SCKYHHPKQG GGSASPVSLN YYGYPLRPGE RECTYYIKTG QCKFGATCKF  60
HHPQPGNIQI PAQSLAPQIA PVPGPTLYPS VQSPSVPSSQ QYGVMVARPP LLPGSYVQGP  120
YGPVLLSPSV VPYPSWNPYP APVSPVASPN TQPAVGSGSV YGMSALSPSA PAYTGAFQSI  180
PPATGPSSST QKEHLFPERP GQPECQYYIK TGDCKFRSSC RYHHPPELVV SKSNVVLSPI  240
GLPLRPGAPT CSHYTQRGQC KFGPACKFDH PMGTLSYSPS ASSLADMPVA PYLVGSSIGT  300
LAPSSSSSDL RSKPISGPSK DSSSTRLSTS TPSGSVGSIF SKSGPAPHLN VQQSGWSSGP  360
STTSSSSSSG TRTSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G215700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826690.0AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380188.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-120C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9N5000.0B9N500_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-93C3H family protein