PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G000100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 144aa    MW: 16056.3 Da    PI: 9.6792
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G000100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY134.99.6e-422314423157
               YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevprv 112
                          vsvPs+sl+++vtvrCGhC +llsvn+  + q+l+ ++      k +l          ++s + +++s s+s++++    ++ ++e pr+
  Potri.009G000100.1  23 QVSVPSSSLLNIVTVRCGHCGNLLSVNMGASLQTLPLQDA----QKLHL----------INSEDLNKDSGSSSKPNKVTaFKSAEHEPPRM 99 
                         79**********************************9996....22222..........22222233333333332222145678899999 PP

               YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaa 157
                          p+   PekrqrvPsaynrfikeei+rika+nPdishreafs+aa
  Potri.009G000100.1 100 SPIRPAPEKRQRVPSAYNRFIKEEIHRIKACNPDISHREAFSTAA 144
                         997777**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-4521144IPR006780YABBY protein
SuperFamilySSF470951.8E-599140IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MNLTKMDEGW TNIPFKLYNS SWQVSVPSSS LLNIVTVRCG HCGNLLSVNM GASLQTLPLQ  60
DAQKLHLINS EDLNKDSGSS SKPNKVTAFK SAEHEPPRMS PIRPAPEKRQ RVPSAYNRFI  120
KEEIHRIKAC NPDISHREAF STAA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G000100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474026e-98EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024888.12e-70PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ10FZ72e-40YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2K1Z0B81e-103A0A2K1Z0B8_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0001s22180.12e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-38YABBY family protein