PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G009400.1

Common Name

POPTR_0009s01480g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 178aa MW: 19496.9 Da PI: 5.6758

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G009400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.6	5.4e-31	14	91	5	82
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 ++ +++h+kv+gRdRR+Rl+++caar+F+L++eLG ++d++tieWLl+ a+p i++ tg + + + ++ + Potri.009G009400.1 14 PKPRKDRHAKVNGRDRRIRLPVNCAARVFQLTQELGNKTDGETIEWLLRVAEPTIIAVTGKGIGTTNTIrgH--AQAARV 91 5788*********************************************************66666555321..222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.0E-28	17	97	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.579	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKKASTSKTK VADPKPRKDR HAKVNGRDRR IRLPVNCAAR VFQLTQELGN KTDGETIEWL 60 LRVAEPTIIA VTGKGIGTTN TIRGHAQAAR VNTTSVSYSS DLHPLVSTGL SSPLMDPSEP 120 RYMEPIQTQG LISPNCEVSA DEPLSFPSEF DNLETNFDME FPVNDMFPSV SGNDHEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G009400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314294.3	1e-130	transcription factor TCP7
TrEMBL	A0A2K1Z0T1	1e-129	A0A2K1Z0T1_POPTR; Uncharacterized protein
STRING	XP_002529440.1	3e-47	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.009G009400.1
Entrez Gene	7491160