PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G009800.1
Common NamePOPTR_0009s01520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 836aa    MW: 91972.5 Da    PI: 7.1689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G009800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65e-096476841954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Potri.009G009800.1 647 FEHflHPYPTDTDKHMLATRTGLSRNQVSNWFINARVR 684
                         564459******************************87 PP
2BELL98.26.8e-32503571472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e q+kkakLl l+eeV++rYkqy++q+q+v+ssFe va l +a+pY+slAlk++S +Fr+Lk  i++q+
  Potri.009G009800.1 503 EYQQKKAKLLFLQEEVCRRYKQYHQQMQMVASSFESVASLSAATPYVSLALKTVSSNFRSLKHGISDQL 571
                         789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-38406569IPR006563POX domain
PfamPF075265.3E-37411568IPR006563POX domain
PROSITE profilePS5007111.726625688IPR001356Homeobox domain
CDDcd000861.27E-10628689No hitNo description
SMARTSM003898.1E-8628692IPR001356Homeobox domain
SuperFamilySSF466892.27E-16630694IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-27631692IPR009057Homeodomain-like
PfamPF059205.1E-18645684IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
METRSFRPES HVAQQSRRDK LRGQQSLTSV QYLDDYPNSL ERISVSPGLS PDLVHVRNNR  60
NDNTIYDSTM FSSEILNFAT SSHVLSAPKV SIVDQELGAV PLNRPILAED SSFTGMTSHP  120
VLSNFNASHK ASSCDPQGCG NWRSLDSQQS YDLMVNYAGG SVGGERNQKP MFVGEVLSNN  180
ARVSNISTSR QYLMPGYNGN QNVQLPSTLR NTFGEISSED SIKQLRVMQV PSLPPYQNAA  240
QDVIPSGCFR PRMNERILHP SFVTESTASH FDNNGSTWMS RPLENYHHWS TGELGLVERT  300
SDQEMMTITS DANTQGLSLS LSSINPPSKV EVTHFGEEYA SEHLQLKVAD RVSQESHQDS  360
KFSKSSSLCA LPKPSIITKS CGKSIHDIVG TSTHALRNTG PLGPFTGYAT ILKSSKFLKP  420
AQQLLEEFSS RTGPKLTRIF EMSEDQVTAP ALADIVNEAN ENSGTNAKNY SGIPSSTFYC  480
SNKASGGDDV GGSGGSCGSY GPEYQQKKAK LLFLQEEVCR RYKQYHQQMQ MVASSFESVA  540
SLSAATPYVS LALKTVSSNF RSLKHGISDQ LKLVTKALGD DLFSRNTVAV GSKGDTITSR  600
SIYMDQSIQK NKSGGVSVGY HEPQQHIWRP QRGLPERSVA ILRAWLFEHF LHPYPTDTDK  660
HMLATRTGLS RNQVSNWFIN ARVRVWKPMV EEIHMLETKG LAEISGKNDG NSPEGNIQSN  720
DEQTSNKLGK NSMLNKQLEC SGIGSSGSSG EQLDEEQWSE GKRSRVEFQV PTTMDGSLMN  780
FLPYQRSGID NGGAVSLTLG LRQGIESAQH QIQLQQHNGQ FKQSFGGQMI HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15634691158Homeobox protein Meis1
4xrs_B2e-15634691158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G009800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314291.10.0BEL1-like homeodomain protein 3 isoform X1
TrEMBLB9HQD00.0B9HQD0_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-85BEL1-like homeodomain 8