PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G012300.1

Common Name

POPTR_0009s01750g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 213aa MW: 23757.8 Da PI: 10.0563

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G012300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.2	3.6e-13	109	194	14	99
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +d ++P+arik+i+k+++ + +s ++ l+ ka e f+ +++ ++ + + ++++l ++++v++ fdfl d vp++ Potri.009G012300.1 109 EDGTACRFPMARIKRIIKSEDSESLLSQDVVFLVNKATEKFLEQFSDEAYDYSVQDRKKSLAYKHLSTVVSKRRRFDFLSDFVPEK 194 5666778****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.02E-16	97	194	IPR009072	Histone-fold
Pfam	PF00808	3.5E-17	115	178	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.9E-23	116	193	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MERVAKSKRE MKKKRSSSKE VVVVTKSKQE KKKSKSKTGN SSPREPVVLL LSSSSSSSSD 60 SQELIEIEGE DDETNSGIKN RSMKSSKIKS ANNAKRKGKD DDLDGEGEED GTACRFPMAR 120 IKRIIKSEDS ESLLSQDVVF LVNKATEKFL EQFSDEAYDY SVQDRKKSLA YKHLSTVVSK 180 RRRFDFLSDF VPEKLNAKDA LADRTLAMTG QG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	182	RKKSLAYKHLSTVVSKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G012300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU225776	9e-58	CU225776.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313518.1	1e-150	DNA polymerase epsilon subunit C isoform X1
TrEMBL	B9HQA8	1e-148	B9HQA8_POPTR; Uncharacterized protein
STRING	POPTR_0009s01750.1	1e-149	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12016	30	31
Representative plant	OGRP8670	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	3e-34	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Potri.009G012300.1
Entrez Gene	7491140