PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G017400.3
Common NamePOPTR_0009s02250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 663aa    MW: 72201.7 Da    PI: 9.1896
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G017400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-094294661954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Potri.009G017400.3 429 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 466
                         554459******************************88 PP
2BELL114.17.4e-37294364272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         rqelq+kk kL+++l+eV++rY+qy++q+q+v+ssFe++ g g+ak+Yt+lAl++iS++Fr+Lkd i++qi
  Potri.009G017400.3 294 RQELQMKKGKLVNMLDEVEQRYRQYHHQMQVVVSSFEQASGFGAAKSYTALALQTISKQFRSLKDTISSQI 364
                         89********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-55220362IPR006563POX domain
PfamPF075262.7E-46225361IPR006563POX domain
PROSITE profilePS5007112.131407470IPR001356Homeobox domain
SMARTSM003892.3E-9410474IPR001356Homeobox domain
CDDcd000869.05E-13410471No hitNo description
SuperFamilySSF466895.99E-17411477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-29413476IPR009057Homeodomain-like
PfamPF059202.7E-18427466IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MATYFHGSSE IQAAAAPSDG IQTLYLMNPN YLSSYSDSTQ QQHQQQPPNM IFFNPSSSTA  60
ASNNGLHTGN LPHGPPQNHH FVGIPLAAPS SNITSLTPDS HSRPSLHGVV PSHVHYNIWG  120
SIDQNSVATA CESSAANDVV SPQVGFRRPV AVSPGRQGLS LSLSSQQAPT PPTPYNRAIG  180
NKHHEIQALH PHVSVVSSGD EIRVSGNSPS SVSAVSNGVS GLQNMVLGSR YLRATQELLD  240
EAVNVGKDLI KSGLIEGSSK EKMKMTKESI TGDGSSGGEA YAANRGAELT TAHRQELQMK  300
KGKLVNMLDE VEQRYRQYHH QMQVVVSSFE QASGFGAAKS YTALALQTIS KQFRSLKDTI  360
SSQIRAASKS LGEEDCIGAK VEGSRLRYVD HQLRQQRALQ QLGMVQHNAW RPQRGLPERA  420
VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYAEEI  480
KEQEKTGSEE NANKNENKES RSHSSAPGES STLQMDQRKG VLHSKQPEKP RNQNASPPRF  540
SYPAISMSPM GAPLQQQAGF TLIGPAEMEG ISLRSSKKPS SDMQNSPSSI LSMDMDVKQG  600
ETSREISANF GGERLIKDGY PLITSSGGFG AYPMGDLGRF NLEQMTPRFS GNSVSLSLGL  660
PH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16416474563Homeobox protein Meis2
3k2a_B1e-16416474563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G017400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2323520.0CU232352.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464286.10.0BEL1-like homeodomain protein 1
RefseqXP_024464287.10.0BEL1-like homeodomain protein 1
RefseqXP_024464288.10.0BEL1-like homeodomain protein 1
RefseqXP_024464289.10.0BEL1-like homeodomain protein 1
RefseqXP_024464290.10.0BEL1-like homeodomain protein 1
RefseqXP_024464291.10.0BEL1-like homeodomain protein 1
TrEMBLA0A2K1Z1900.0A0A2K1Z190_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02250.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-103BEL1-like homeodomain 1