PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G019200.4

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 227aa MW: 25529.5 Da PI: 7.2144

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G019200.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.3	7e-28	4	96	1	89
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp G+rF Pt+eelv++yL++k+eg++ el++vi+e+ iy++eP dLp+ +++++++w+fF++r+ ++a+g r+nr+t++gyWkatgk Potri.009G019200.4 4 LPLGYRFYPTEEELVSFYLHNKLEGTRQELQRVIPEISIYDIEPGDLPQlsgeLCRGNTEQWFFFTPRQAREARGGRPNRTTATGYWKATGKA 96 699*************************99************656654445778*****************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-35	3	136	IPR003441	NAC domain
PROSITE profile	PS51005	28.815	4	146	IPR003441	NAC domain
Pfam	PF02365	8.4E-16	5	110	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEELPLGYRF YPTEEELVSF YLHNKLEGTR QELQRVIPEI SIYDIEPGDL PQLSGELCRG 60 NTEQWFFFTP RQAREARGGR PNRTTATGYW KATGKAPTGR KTKWKMNEYR AIEVHESSRN 120 ATSKLRHEFS LCRVYVVSGS FRAFDRRPLE AVTRGTQHLL RGTHVGDAAT TPAQDPITVE 180 MTSSPETSYS GGDHVDYPGT AASANWGLIL HGNDRNNWIG PAQIDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-27	4	135	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-27	4	135	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-27	4	135	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-27	4	135	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-27	4	135	20	166	NAC domain-containing protein 19
3swm_B	4e-27	4	135	20	166	NAC domain-containing protein 19
3swm_C	4e-27	4	135	20	166	NAC domain-containing protein 19
3swm_D	4e-27	4	135	20	166	NAC domain-containing protein 19
3swp_A	4e-27	4	135	20	166	NAC domain-containing protein 19
3swp_B	4e-27	4	135	20	166	NAC domain-containing protein 19
3swp_C	4e-27	4	135	20	166	NAC domain-containing protein 19
3swp_D	4e-27	4	135	20	166	NAC domain-containing protein 19
4dul_A	4e-27	4	135	17	163	NAC domain-containing protein 19
4dul_B	4e-27	4	135	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G019200.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464634.1	1e-164	NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K1Z1C2	1e-168	A0A2K1Z1C2_POPTR; Uncharacterized protein
STRING	POPTR_0009s02430.1	1e-141	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-68	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Potri.009G019200.4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]