PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G022000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 146aa    MW: 16479.8 Da    PI: 5.3022
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G022000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.81e-121693098
               NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                        +++dedv +i+  +P l+ska elf+ +l  r++  + +   +tl+   ++++v+  ++fdfl +iv +
  Potri.009G022000.1  1 MQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSLHLKQCVQTFNVFDFLREIVSK 69
                        889**************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008085.3E-13154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.38E-19171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.6E-18168IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MQTDEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTLNSLHL KQCVQTFNVF  60
DFLREIVSKV PDLGGPDAAF DEHGIGKRRK VADDEDNDSD EECNRSRTET RVDVFIFIMH  120
GQQTNVFESF KSGSRRKDTL KLLVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-161552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G022000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464939.15e-73LOW QUALITY PROTEIN: dr1-associated corepressor homolog
SwissprotA0JPP11e-22NC2A_RAT; Dr1-associated corepressor
SwissprotQ149191e-22NC2A_HUMAN; Dr1-associated corepressor
SwissprotQ2YDP31e-22NC2A_BOVIN; Dr1-associated corepressor
TrEMBLA0A3N7FHW16e-73A0A3N7FHW1_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02710.13e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.19e-44nuclear factor Y, subunit C11