PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G023800.1
Common NamePOPTR_0009s02870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 239aa    MW: 27292.3 Da    PI: 9.4114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G023800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-094286654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++E +RR ++N+ + +Lr+l+ ++    s+K + a++ + A++YI +L
  Potri.009G023800.1 42 FAIELQRRGQLNDNYKTLRDLIKNP----STKEDRATVIRDAIKYIIQL 86
                        689*******************999....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5283686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1139100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00254292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-74286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-943101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-74386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MIKQLRQQIK PSMEELPGLE LGMTSCTDMI QEQQSTTSLI AFAIELQRRG QLNDNYKTLR  60
DLIKNPSTKE DRATVIRDAI KYIIQLIRTV YELKQLVEKT RGKKLDTIGG VDVFTKPVVR  120
KSQYSHSYND VSSGPSFSKK HSSVQRKSKD TEIDVRIIGD EVTIKVLRRR KKNDYCLLFV  180
SRVLDELHMD LHFVSSCYIG YETYYFQFKT KINGGPSSDN AHTIADKLIE VLDSSCSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170KVLRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G023800.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314221.11e-176transcription factor bHLH89
TrEMBLB9HPR81e-174B9HPR8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02870.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3967922
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.27e-35bHLH family protein