PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G027300.1
Common NamePOPTR_0009s03240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 244aa    MW: 27515.8 Da    PI: 7.3841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G027300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-171057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed ll++ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Potri.009G027300.1 10 KGPWTEQEDILLINFVNLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                        79********************************************97 PP
2Myb_DNA-binding53.55.3e-1763107147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++
  Potri.009G027300.1  63 RGKMTPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 107
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.586557IPR017930Myb domain
SuperFamilySSF466898.8E-309104IPR009057Homeodomain-like
SMARTSM007173.8E-16959IPR001005SANT/Myb domain
PfamPF002491.9E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-211164IPR009057Homeodomain-like
CDDcd001674.54E-121257No hitNo description
PROSITE profilePS5129425.53258112IPR017930Myb domain
SMARTSM007176.8E-1662110IPR001005SANT/Myb domain
PfamPF002491.2E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2365111IPR009057Homeodomain-like
CDDcd001676.14E-1265107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKMMQDETRK GPWTEQEDIL LINFVNLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHAR WGNRWSRIAR KLPGRTDNEI KNYWRTHTRK KAQERKSVVS  120
PSLSSSNCSS SSNITTVNSS SPPGTGEASF YDTGGLEQVA SAGKNGEAVQ GGEKGYSMDD  180
IWRDIENTIE PVCDGFSEEG CNFSYPSLAS PSWEYRPDIL WSISGEESKM FLPYDDGTML  240
LTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-28211250159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-28211250159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27790.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G027300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313452.20.0transcription factor MYB48 isoform X2
SwissprotQ9LX824e-99MYB48_ARATH; Transcription factor MYB48
TrEMBLB9HPK90.0B9HPK9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.19e-97myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]