PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G027700.1
Common NamePOPTR_0009s03280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 194aa    MW: 21035.4 Da    PI: 10.0784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G027700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000565173123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+k Fs+   L  H  +H
  Potri.009G027700.1 51 FSCKTCNKNFSSFQALGGHRASH 73
                        89**********99999998887 PP
2zf-C2H210.70.001799121123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F+    L  H+r+H
  Potri.009G027700.1  99 HQCSICGLEFPIGQALGGHMRRH 121
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.81E-949121No hitNo description
SMARTSM003550.565173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3885178IPR007087Zinc finger, C2H2
PfamPF139121.7E-105175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM003550.1399121IPR015880Zinc finger, C2H2-like
PfamPF139128.6E-1099123IPR007087Zinc finger, C2H2
PROSITE profilePS501578.70499126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSSITMKRGR EEAELDMANC LMLLYKVGKA DDHELPTNYK SSSPSGAGRL FSCKTCNKNF  60
SSFQALGGHR ASHKKPKLVG STGNLLMKLP NSPPKPKNHQ CSICGLEFPI GQALGGHMRR  120
HRAGNIDATS NSADNELAVT YPPFLPAIPV LKKSNSSKRV LCLDLSLALP MDQNESELQL  180
RKAGTRPVLK CFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G027700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314198.31e-141zinc finger protein ZAT12
TrEMBLA0A2K1Z1T61e-140A0A2K1Z1T6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03280.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-38C2H2 family protein