PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G037100.1
Common NamePOPTR_0009s04190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 206aa    MW: 23020.6 Da    PI: 5.9773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G037100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133153123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ Fs+   L  H++ H
  Potri.009G037100.1 31 YECTFCKRGFSNAQALGGHMNIH 53
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-52857IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.71E-72858No hitNo description
PROSITE profilePS5015711.5723158IPR007087Zinc finger, C2H2
SMARTSM003550.00993153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDTDDQPSQE SPDQVTLDHE QEQGTSQARS YECTFCKRGF SNAQALGGHM NIHRKDKAKL  60
LKHSSSETQQ SLDIPKINPS FSPAITSLME SGRDESSIKW PFIVDKAGSD HDDTKRDKTQ  120
VGEIQKLGFF VQNSSSTEDH QNPSSQVHGI SKKSDLSSSS EIDLELRLWP EPQESSPGFH  180
MVVLKAKYMV RIFALHCIFL FEHGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G037100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463877.11e-128transcriptional regulator TAC1
TrEMBLA0A2K1Z2991e-150A0A2K1Z299_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04190.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-17C2H2 family protein