PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G046800.2
Common NamePOPTR_0009s05150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 689aa    MW: 74404.1 Da    PI: 6.0725
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G046800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06264284526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Potri.009G046800.2 264 PCPEFRK-GSCRQGDACEYAHG 284
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127968.7E-956129IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.24E-1457135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.96360135IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.2E-1560140IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0216090IPR002110Ankyrin repeat
CDDcd002041.80E-1362135No hitNo description
SMARTSM002480.001995127IPR002110Ankyrin repeat
PROSITE profilePS5008811.96895130IPR002110Ankyrin repeat
SMARTSM003561.0E-4259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662264286IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709294318IPR000571Zinc finger, CCCH-type
SMARTSM0035639294317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MENEFQKQDG VCCDFSLLLE LSASNDLTGF KRAIEVEGHD IDEPGLWYGR RIGSKKMGFE  60
ERTPLIIAAL YGSKDVLNYI LETGHVDVNR GYGSDGATAL HCAAAGGSSS AHEVARLLLD  120
ASADPNSVDA KGNHPGDLIA PVVESGSNST RKTLEIMLKG GSSGEESCVL AYQIVNEMDG  180
LEQQEISTPR VSKDGHEKKE YPIDLTLPDI KNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GSCRQGDACE YAHGIFECWL HPAQYRTRLC  300
KDETGCARRV CFFAHKPEEL RPLYASTGSA VPSPRSYSAN CSNLDMSSIS PLSLGSPSVL  360
IPSTSSPPTP SGSSSPIGGW TNHSNVVPPA LQLPGSRLKS ALCARDMDLD MELLGLESHR  420
RRQQFMDEIS GLSSPSSWNN GLSTASAFAA SGDRTGELNR LGGVRPTNLE DIFGSLDPSI  480
LPQMQGLSLD AAVAQLQPPT GMQMRQNINQ QLRSSYPTSF SSSPVRRSPS FGVDHSGGAA  540
AAVLSSRSAA FAKRSQSFVE RSAVNRHTGF SSPSSSANVM PSNLSDWGSP DGKLDWGIQG  600
EELNKLRKSA SFGFRSNGSS FATAGASVPA TVDEPDVSWV QSLVKDTPAK SGPLGFEEQQ  660
QCHLNIGGSE TLPAWVEQLY MEQKPLVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.129780.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G046800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0286471e-112CT028647.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314096.30.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K1Z2T30.0A0A2K1Z2T3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05150.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein