PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G052900.6

Common Name

POPTR_0009s05760g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YA

Protein Properties

Length: 211aa MW: 23453.8 Da PI: 9.2486

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G052900.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	95	8.7e-30	30	86	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p++VNaKQy +I++RR++Rak+e +kkl +k+rkpylheSRh+hA+rR+R+sgGrF Potri.009G052900.6 30 QDPVFVNAKQYPGIIRRREQRAKAEVDKKL-IKARKPYLHESRHRHAMRRERSSGGRF 86 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.6E-32	28	89	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.047	29	89	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.7E-26	32	86	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-21	32	54	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	34	54	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-21	63	86	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MMAYGHQPLG YPQFVGMPHA RMLLPLEVAQ DPVFVNAKQY PGIIRRREQR AKAEVDKKLI 60 KARKPYLHES RHRHAMRRER SSGGRFAKKT GDDASKNTSE GKLNGSGPVH ASQSRSSSGS 120 ELLPSDSVET WNSSEGQKEA RESQVHDTFE AHDYVNRGGH YQKHSGLQSS AYGSYLGDNE 180 DGDRSGENED EDCPGQQLGN QAKRRFFGPQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-16	30	103	2	75	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	79	RHRHAMRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G052900.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464106.1	1e-156	nuclear transcription factor Y subunit A-1 isoform X2
Refseq	XP_024464107.1	1e-156	nuclear transcription factor Y subunit A-1 isoform X2
Swissprot	Q945M9	3e-48	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A2K1Z357	1e-154	A0A2K1Z357_POPTR; Uncharacterized protein
STRING	POPTR_0009s05760.1	1e-147	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	4e-47	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Potri.009G052900.6
Entrez Gene	7467369

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]