PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G060600.1
Common NamePOPTR_0009s06540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 378aa    MW: 41416.2 Da    PI: 7.5596
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G060600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.1e-31170226158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQ+++I++RRq+Rak+e ekk   k rkpylheSRh+hAlrR+Rg+gGrF
  Potri.009G060600.1 170 EEPVYVNAKQFHGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHALRRARGCGGRF 226
                         69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-36168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.353169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-27171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-23203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMPAKSEKED RRLDHSGPSP FQTNIYSQPW WRDVGNSPSL GDTASKLSSV EHLNGSLANA  60
AIQSQVNTGL QKGAMVNKDM QTDVTSQSDE SNEQEHHLKH IPSPTTVTMG GHLEPNSQME  120
LVGHSIVLTS HPYTDPQYGG MFASYGAQAM VPQLYGMPHA RMPLPLEMEE EPVYVNAKQF  180
HGIMRRRQAR AKAELEKKAV KVRKPYLHES RHQHALRRAR GCGGRFLNTK KLDNSATNPT  240
SEKGINSVAN ISKQSYSFSV SECFPTEGSG DLNSSGDLEE GKGSQASSNG HGNGHALSSR  300
YHSSSHDGSF LGQQKETTHG NREKLEALAM FNLGGNLSCA VFLRQFILGF RSLVTWCIHG  360
GESVVYVMDF MLSSDLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19170234266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.81300.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G060600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9144400.0HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464897.10.0nuclear transcription factor Y subunit A-7
RefseqXP_024464898.10.0nuclear transcription factor Y subunit A-7
TrEMBLG0ZAK90.0G0ZAK9_POPEU; CCAAT-binding transcription factor subunit B
STRINGPOPTR_0009s06540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-30nuclear factor Y, subunit A1