PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G064700.3
Common NamePOPTR_0009s06910g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 415aa    MW: 45459.3 Da    PI: 7.6177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G064700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-11342387655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el P+     +k  + a++L +Ave+Ik+Lq
  Potri.009G064700.3 342 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEHIKDLQ 387
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.081336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14339399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10340391No hitNo description
Gene3DG3DSA:4.10.280.104.1E-13341399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MNLLYSSSFK YSDGELRKSQ EFMDLNPYHY HQQQQQIQQN SGLMRYRSAP SSILESLVNG  60
TSGHDGGGIE SGDYRYLRSS SPEMDTMLAR FMSSCNGSGD SSSQNLQEFG ERPAIKQEGG  120
DSEMVYQSLP GHNLVTDNSV SVGNSMDSAF NVMSSMALEN SMQATKMSTA NGSNLARQNS  180
SPAGLFSDLG VDNGGSFRAG NGTNGEASPT NKLRRHVNFS SGQRMLPQIA EIGEECIGGR  240
SPEGDVSEAR YMSRFTSDSW DGASLSGLKR QRDNDGNMFS GLNTLDNQDG NSGNRVTGLT  300
HHLSLPKTLS ETATIEKFLD FQGNSVPCKI RAKRGFATHP RSIAERVRRT RISERMRKLQ  360
ELFPNMDKQT NTADMLDLAV EHIKDLQKQV KTLTDTKAKC TCSSKQKHYS SPSA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G064700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463710.10.0transcription factor bHLH130 isoform X3
TrEMBLB9HNL60.0B9HNL6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-71bHLH family protein