PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G072100.1
Common NamePOPTR_0009s07640g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 223aa    MW: 25652.9 Da    PI: 9.8247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G072100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.73.4e-17131352121
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvka....eekewyfFskrdkkyatgkrknratk..sgyWka 85 
                         ppG+rF Ptd el ++yL +kv+g +l+   ++k++++y ++ePw++ +++++    ++++++f ++ ++++a+++r++r +    g+Wk 
  Potri.009G072100.1  13 PPGYRFCPTDVELACFYLYRKVNGLPLPN--TVKDCNLYgDHEPWEIWEAFEGselsNKDDLFFLTQLKNRSAKDSRSKRRVGrnGGTWKG 101
                         89************************888..79****994579****75333322324457899999999999999999853334899**9 PP

                 NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                           k  + +   ++ ++++k L + + +++k  +++ 
  Potri.009G072100.1 102 DKKIGTFTF--DTITWTRKRLSYQNPNSKKNDRCNY 135
                         888777777..7789********9888888778776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-1710134IPR003441NAC domain
PROSITE profilePS5100515.76112166IPR003441NAC domain
PfamPF023656.0E-1213129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MQGEHDSSNI EPPPGYRFCP TDVELACFYL YRKVNGLPLP NTVKDCNLYG DHEPWEIWEA  60
FEGSELSNKD DLFFLTQLKN RSAKDSRSKR RVGRNGGTWK GDKKIGTFTF DTITWTRKRL  120
SYQNPNSKKN DRCNYVHCLV RKKVTKRTDG TNVSHNHNAI EKSQRCDRPF ALEEHHQAKR  180
LKLDLAQPHQ LICNYNQQTE AIPTGGMSAF ATSHRRKVKV TP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G072100.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313991.21e-169NAC domain-containing protein 71
TrEMBLA0A2K1Z4791e-168A0A2K1Z479_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07640.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.18e-11NAC domain containing protein 71