PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G094300.1
Common NamePOPTR_0009s09730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 269aa    MW: 28713 Da    PI: 8.822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G094300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.000151601971355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R+++ +++  L++l+ +      +K + a++L +A+ YI+ Lq
  Potri.009G094300.1 160 REKVGDRITSLQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 197
                         889999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.893147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-4153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-10156208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-4156201No hitNo description
Gene3DG3DSA:4.10.280.103.0E-7160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSGSESFLEG SHLVAEGNPP SLSELLFSND DDELGAGVDM AHASRFSSTG KSPRMLCFGG  60
YTHQNESETV MFSEATKTTP QISGVTCSDS SSASSGNNCN GTVNVISTVS KSNRKRNGSS  120
QEVTAKSTNT IAKTNLPSQR TSKKTKTENP RSTGNAKVKR EKVGDRITSL QQLVSPFGKT  180
DTASVLHEAM GYIRFLQDQV KVLCSPYLQN LPVSTKVQSF FPIKNLSSRG LCLVPVDCTV  240
HLASSNGADF WSPATTEKNH PSFSSSKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G094300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464510.10.0transcription factor bHLH113
TrEMBLB9HS720.0B9HS72_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.18e-50bHLH family protein