PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.009G103100.1

Common Name

POPTR_0009s10590g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 271aa MW: 30923.8 Da PI: 9.1069

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.009G103100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.3	4.9e-17	125	214	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v+ +l lp +f+++h + ++tlede+g + e k+ ++ + l++GW++F+ +++L +gD +vF+l++ ++ Potri.009G103100.1 125 FVKPMLQSHVTGGFWLGLPVPFCKAHlpH----YDEMITLEDENGDESETKY--LAGKTG--LSGGWRGFAIDHDLVDGDALVFQLVSPTK 207 89**********************543....3458***********..555544..*********************998666 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r Potri.009G103100.1 208 F--KVYIVR 214 6..888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.7E-21	118	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-24	119	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.27E-28	123	214	No hit	No description
SMART	SM01019	2.6E-23	125	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.928	125	216	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-15	125	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MMKSKQTYEE TRQKRMEENK KRMEELNLTK LSQSLLSKPS PVKKAKPRIS RSPVASTPVR 60 RSNRVADKPP VSYKEVPIEP LARPRRSYQR RDLLNRVYAS DEVRIYAIHR ADQIQSSLGA 120 DFPSFVKPML QSHVTGGFWL GLPVPFCKAH LPHYDEMITL EDENGDESET KYLAGKTGLS 180 GGWRGFAIDH DLVDGDALVF QLVSPTKFKV YIVRAYDSED NEDQENTKDD EVKDNTEDKE 240 DEGKSEENGK VSDATDLNRR YSKRIRASKK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.009G103100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313112.2	0.0	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	2e-92	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	B9HRZ6	0.0	B9HRZ6_POPTR; Uncharacterized protein
STRING	POPTR_0009s10590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-77	B3 family protein

Link Out ? help Back to Top
Phytozome	Potri.009G103100.1
Entrez Gene	7490028

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]