PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103200.1
Common NamePOPTR_0009s10600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 279aa    MW: 31804.8 Da    PI: 9.2031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-16125213197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k +++s+v+   +l lp  f+++h  +   ++ ++tlede+g +++ k+  +k++    l++GW++F  +++L +gD +vF+l++ ++f
  Potri.009G103200.1 125 FLKPMVQSHVSGCFWLGLPVYFCKSHlPL---SDEMMTLEDENGDEFQTKYLAQKTG----LSGGWRGFSIDHELVDGDALVFQLVSPTRF 208
                         89************************633...4558***************444444....***********************9986777 PP

                         ..EEEEE CS
                  B3  91 elvvkvf 97 
                           +v + 
  Potri.009G103200.1 209 --KVYIA 213
                         ..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-19120214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-22120214IPR015300DNA-binding pseudobarrel domain
CDDcd100179.16E-26123214No hitNo description
PfamPF023625.7E-15125214IPR003340B3 DNA binding domain
SMARTSM010191.9E-20125216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAKSKQTYEE IRQKRVEENK KRMEELNLTK LSQSLLSKPS PLKKGKPRTF RPAAALTPVR  60
RSTRVSDRPT VSYKELPVET LERTRRSYSY RRRGFGVYAS SEARAYAIDK AEQIQSRLGA  120
DFPSFLKPMV QSHVSGCFWL GLPVYFCKSH LPLSDEMMTL EDENGDEFQT KYLAQKTGLS  180
GGWRGFSIDH ELVDGDALVF QLVSPTRFKV YIARAYDSED NENKEDMEED NEGKENIDND  240
KNSDSKHLDG IAKRTRASNC FSTLQNLQKF SMIGNQST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379203.10.0B3 domain-containing protein At3g19184
SwissprotQ1G3M32e-79Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLU5G0R30.0U5G0R3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]