PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103200.2
Common NamePOPTR_0009s10600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 261aa    MW: 29845.6 Da    PI: 9.5246
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16125213197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+k +++s+v+   +l lp  f+++h  +   ++ ++tlede+g +++ k+  +k++    l++GW++F  +++L +gD +vF+l++ ++f
  Potri.009G103200.2 125 FLKPMVQSHVSGCFWLGLPVYFCKSHlPL---SDEMMTLEDENGDEFQTKYLAQKTG----LSGGWRGFSIDHELVDGDALVFQLVSPTRF 208
                         89************************633...4558***************444444....***********************9986777 PP

                         ..EEEEE CS
                  B3  91 elvvkvf 97 
                           +v + 
  Potri.009G103200.2 209 --KVYIA 213
                         ..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-22120214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-19120214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-25123214No hitNo description
SMARTSM010191.9E-20125216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674125216IPR003340B3 DNA binding domain
PfamPF023624.9E-15125214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAKSKQTYEE IRQKRVEENK KRMEELNLTK LSQSLLSKPS PLKKGKPRTF RPAAALTPVR  60
RSTRVSDRPT VSYKELPVET LERTRRSYSY RRRGFGVYAS SEARAYAIDK AEQIQSRLGA  120
DFPSFLKPMV QSHVSGCFWL GLPVYFCKSH LPLSDEMMTL EDENGDEFQT KYLAQKTGLS  180
GGWRGFSIDH ELVDGDALVF QLVSPTRFKV YIARAYDSED NENKEDMEED NEGKENIDND  240
KNSDSKHLDG IAKRTRASRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379203.10.0B3 domain-containing protein At3g19184
SwissprotQ1G3M36e-80Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLU5G0R30.0U5G0R3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-67B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]