PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 464aa    MW: 52181.3 Da    PI: 6.0591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.41.9e-1675163298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k ++ps+v++  +l +pk+f+e++  + +e+++++lede+g+ +e k+    ++  + l++GW++F  ++++ egD+++F+l++  +f  
  Potri.009G103300.1  75 IKHMLPSNVTRVFWLHFPKRFCEAYL-P-KEDTMIVLEDERGKIYETKY--LARK--VGLSAGWRGFSIDHKIMEGDVLIFHLVEPAKF-- 157
                         68899********************5.3.36679***************..4444..45***********************9875555.. PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v ++r
  Potri.009G103300.1 158 KVYIVR 163
                         887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2066164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-2368167IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-2572163No hitNo description
PROSITE profilePS5086313.09874165IPR003340B3 DNA binding domain
SMARTSM010193.8E-1874165IPR003340B3 DNA binding domain
PfamPF023625.3E-1475163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAVLQVNKQK EKRGRAPKVN GIKKVPSNLS VKSESHTSKR AKIDDLYDNE EVKSDVMMRA  60
KEIQSNLSPE LPSIIKHMLP SNVTRVFWLH FPKRFCEAYL PKEDTMIVLE DERGKIYETK  120
YLARKVGLSA GWRGFSIDHK IMEGDVLIFH LVEPAKFKVY IVRVNDSEEV DGALALLKLE  180
AGVKQMGPIN SSEVDGALGL LKLEAAIKQM TPINEAVHVE KLSKVSEEME DLDFEHLSLD  240
NPEKNNEKNV KLACLTTFGP ISDLYEYESE DLGSETTDGI RLSKSAVDFK EVKCFEDFDI  300
LVNGLVISSE LSKPLQTKYY KLCCSQNSFL HDHLLDGLNC KLVVGMLSET INIADAIRAS  360
KLTNSLESFA IWEKTLKAFE GLGMNVGFLL ARLGQLMHLS AKSKRYEEAT LQRVNAKEEM  420
TTLKAKLLEV KDTINRLGVE IEKLVVDSEN LELKFQEVAK APW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464278.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A2K1Z5S40.0A0A2K1Z5S4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-35B3 family protein