PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G103400.1
Common NamePOPTR_0009s10620g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 478aa    MW: 54230.3 Da    PI: 6.1341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G103400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.8e-19113201197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ s+f 
  Potri.009G103400.1 113 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLVKPSRF- 196
                         89*********************9994.33.5679***************4444....55************************998888. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          +v ++
  Potri.009G103400.1 197 -KVYIV 201
                         .66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-22107204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24109203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-26111202No hitNo description
PROSITE profilePS5086314.043113204IPR003340B3 DNA binding domain
PfamPF023625.5E-17113201IPR003340B3 DNA binding domain
SMARTSM010193.1E-20113204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDAKEDQNTS PKPQLPISNP VPLNTYPRIR RRKPNMSKIK LTQIHEKSPE PEYKTGHELQ  60
VLYDKSGESR EPRSRKRKKD AFSVFYDSTE TKSPAMELAE EIRTNLEAAY PSFAKTLVRS  120
NVTVGFWMHL PMRFCKMHLP KNDTTVFLEN ESGEEYILNY IAERTALSGG WKAFCAANNL  180
HEGDVLVFHL VKPSRFKVYI VKGNGSSQGD GEFGIPSSGA YGKEIISEPA EKDVKSSKKA  240
EPLKLLPVGH QEENNQENGL IAVENNKGYV ADQSENESED RASETLRVIK LSGPTVDFNN  300
VKGIENFRIL LNGFAIDSEL SEHHRTKYYE LCRSQSSFLH SNLLNSINHK LAVEIIIGTV  360
DISEGIRSSK LSSSQADYGV WDKTLKGFEL LGMKVGFLRE RLSRLMSLAL ESEEAMESEC  420
REVRLEQARV DEEMKSLELR LLKLKETRER LDDEMEILKE NAEKHELTFQ EAVNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478RKRKK
27479RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G103400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295038e-91CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313110.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLB9HRZ40.0B9HRZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0009s10620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-32B3 family protein